Sim_Model Namespace Reference

Namespace of functions for controlling GO_Fish simulations. More...

Classes
struct	bool_off
	functor: turns sampling and preserving off (for every generation except the final one which is always sampled) More...
struct	bool_on
	functor: turns sampling and preserving on (for every generation except the final one which is always sampled) More...
struct	bool_piecewise
	functor: returns the result of function f1 until generation inflection_point, then returns the result of function f2 More...
struct	bool_pulse
	functor: returns the result of function f_default except at generation pulse returns the result of function f_action More...
struct	demography_constant
	functor: single, constant population size (N individuals) across populations and over time More...
struct	demography_exponential_growth
	functor: models exponential growth of population size (individuals) over time More...
struct	demography_logistic_growth
	functor: models logistic growth of population size (individuals) over time More...
struct	demography_piecewise
	functor: demography function changes from d1 to d2 at generation inflection_point More...
struct	demography_population_specific
	functor: one population, pop, has a different, demography function, d_pop, all others have function, d More...
struct	demography_sine_wave
	functor: models population size (individuals) as a sine wave through time More...
struct	F_mu_h_constant
	functor: models parameter p as a constant across populations and over time More...
struct	F_mu_h_piecewise
	functor: parameter function changes from p1 to p2 at generation inflection_point More...
struct	F_mu_h_population_specific
	functor: one population, pop, has a different, parameter function, p_pop, all others have function p More...
struct	F_mu_h_sine_wave
	functor: models parameter as a sine wave through time More...
struct	migration_constant_directional
	functor: migration flows at rate m from pop1 to pop2 and function rest for all other migration rates More...
struct	migration_constant_equal
	functor: migration flows at rate m from pop i to pop j =/= i and 1-(num_pop-1)*m for i == j More...
struct	migration_piecewise
	functor: migration function changes from m1 to m2 at generation inflection_point More...
struct	selection_constant
	functor: models selection coefficient s as a constant across populations and over time More...
struct	selection_linear_frequency_dependent
	functor: models selection coefficient as linearly dependent on frequency More...
struct	selection_piecewise
	functor: selection function changes from s1 to s2 at generation inflection_point More...
struct	selection_population_specific
	functor: one population, pop, has a different, selection function, s_pop, all other have function s More...
struct	selection_sine_wave
	functor: models selection as a sine wave through time More...

Detailed Description

Namespace of functions for controlling GO_Fish simulations.

Functions for modeling selection, inbreeding, mutation, dominance, demography, migration across populations and over time as well as functions to preserve mutations in a generation and to sample time points in the simulation.

Use of these functions is optional as users can supply their own with the same given format, for details on how to write your own simulation functions, go to the Modules page, click on the simulation function group which describes the function you wish to write, and read its detailed description.

To use Sim_Mut functions and objects, include header file: go_fish.cuh